About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26972872_26976036_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26972872 - 26976036
Intron Length:
3165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATGAT
U12 Branch Point Sequence:
TCCTTCCTGACT
Flanking Amino Acid:
TTKEDQDQVEETPNNEYSTV
Intron Amino Acid Position:
1681

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
64.5
0.36
1.1
55.4
40.3
Major PPT
76.3
0.59
0.9
70
35.1
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
59.1
0.37
1.7
75.14
42

Associated Gene:

Gene:
ZFYVE26
Ensembl Gene ID:
ENSAPLG00000014809
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044763
26944895 - 26985133
40239
ENSAPLT00000015469
26944895 - 26985133
40239