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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26976159_26976249_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26976159 - 26976249
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATCT
5'SS Class:
strong_major
3'SS Sequence:
CTCAATTTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
CTTTCCTCAATT
Flanking Amino Acid:
IVRSEFYYEQAPSSSLCIAI
Intron Amino Acid Position:
1722

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27.8
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
69.8
0.45
1
68.6
41.7
Minor 5ss
35.1
-1.7
3.1
48.3
47.4
Minor BPS
75.5
0.88
1.5
88.16
37.4

Associated Gene:

Gene:
ZFYVE26
Ensembl Gene ID:
ENSAPLG00000014809
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044763
26944895 - 26985133
40239
ENSAPLT00000015469
26944895 - 26985133
40239