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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26976471_26977142_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26976471 - 26977142
Intron Length:
672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTTAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
ATTTGTTTAACC
Flanking Amino Acid:
GRSQDLALCDSYISKVDVLN
Intron Amino Acid Position:
1795

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
82
26
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
80.3
0.68
0.8
73.8
36.9
Minor 5ss
36.5
-1.5
2.9
49.3
46.9
Minor BPS
71.2
0.65
1.7
80.43
34.5

Associated Gene:

Gene:
ZFYVE26
Ensembl Gene ID:
ENSAPLG00000014809
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044763
26944895 - 26985133
40239
ENSAPLT00000015469
26944895 - 26985133
40239