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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26979528_26980438_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26979528 - 26980438
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GGTGTTTGTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAG
U12 Branch Point Sequence:
TTTGTTTCAGGC
Flanking Amino Acid:
REALLHLLNKESPSEVFIEG
Intron Amino Acid Position:
1988

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.5
1.05
0.7
92.2
16.5
Major BPS
58.3
0.21
1.7
71.4
45.1
Major PPT
67
0.38
1
61.1
44.7
Minor 5ss
32
-2.1
2.8
41.5
45.1
Minor BPS
43.6
-0.5
2
57.33
42.2

Associated Gene:

Gene:
ZFYVE26
Ensembl Gene ID:
ENSAPLG00000014809
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044763
26944895 - 26985133
40239
ENSAPLT00000015469
26944895 - 26985133
40239