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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26997370_26998837_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26997370 - 26998837
Intron Length:
1468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
CTTTCCTTAAAG
Flanking Amino Acid:
DEKQREANETLREMEEELKY
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
69.2
43.2
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
78.1
0.63
1
78.7
27.5
Minor 5ss
39.2
-1.2
2.9
49.5
46.5
Minor BPS
76.7
0.7
1.5
76.73
40.6

Associated Gene:

Gene:
VTI1B
Ensembl Gene ID:
ENSAPLG00000029959
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043122
26994631 - 27002564
7934