About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26999030_27000313_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26999030 - 27000313
Intron Length:
1284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TATTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTGTGTTTAATA
Flanking Amino Acid:
GIFSTENEQSTNLQSQRVLL
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
74.3
36.2
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
87.2
0.84
0.8
84.8
35.4
Minor 5ss
36.8
-1.5
2.9
46.6
41.8
Minor BPS
65.4
0.48
1.7
74.46
38.2

Associated Gene:

Gene:
VTI1B
Ensembl Gene ID:
ENSAPLG00000029959
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043122
26994631 - 27002564
7934