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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27000488_27001431_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27000488 - 27001431
Intron Length:
944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TGTTTCTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
ACTTGTTTAACT
Flanking Amino Acid:
REQLERTKSRLVNTSENLSK
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.7
40.1
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
82
0.72
0.7
81.3
30.7
Minor 5ss
36.4
-1.5
2.7
38.9
40.3
Minor BPS
68.1
0.65
1.7
81.74
40.3

Associated Gene:

Gene:
VTI1B
Ensembl Gene ID:
ENSAPLG00000029959
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043122
26994631 - 27002564
7934