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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27001494_27002273_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27001494 - 27002273
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTAACTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CCTATTTTAACT
Flanking Amino Acid:
SRKILRSMSRRVATNKLLLS
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
73.7
0.53
0.9
65.1
40.8
Minor 5ss
29.7
-2.3
2.6
33.7
41.6
Minor BPS
67
0.61
1.3
75.45
41.9

Associated Gene:

Gene:
VTI1B
Ensembl Gene ID:
ENSAPLG00000029959
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043122
26994631 - 27002564
7934