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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27002975_27003911_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27002975 - 27003911
Intron Length:
937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
ATAATTTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTCACAATA
Flanking Amino Acid:
MYIAEEIHNTGMLSAVDMVE
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75
0.56
0.9
68.9
41.1
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
59.3
0.29
1.8
76.28
34.8

Associated Gene:

Gene:
ARG2
Ensembl Gene ID:
ENSAPLG00000015602
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016259
27002769 - 27021540
18772