About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27004049_27005421_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27004049 - 27005421
Intron Length:
1373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAAAC
5'SS Class:
major
3'SS Sequence:
TTATTGTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
AAGTTTTTAACA
Flanking Amino Acid:
MERTFEQLMRRRQRPIHLSF
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
75.1
35.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
82
0.72
0.9
73.8
41.5
Minor 5ss
39.3
-1.2
2.9
51.9
44.9
Minor BPS
70
0.62
1.2
70.23
36

Associated Gene:

Gene:
ARG2
Ensembl Gene ID:
ENSAPLG00000015602
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016259
27002769 - 27021540
18772