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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27005756_27008241_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27005756 - 27008241
Intron Length:
2486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCGCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
ATGTCATTAAAC
Flanking Amino Acid:
SFLLRELQDKVPQLPGFSWL
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.5
28.6
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
80.7
0.69
0.9
73.9
36.1
Minor 5ss
39
-1.2
3.3
52.8
38.5
Minor BPS
62.9
0.38
1.7
71.7
38.8

Associated Gene:

Gene:
ARG2
Ensembl Gene ID:
ENSAPLG00000015602
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016259
27002769 - 27021540
18772