About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27008402_27009624_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27008402 - 27009624
Intron Length:
1223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTACTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAC
U12 Branch Point Sequence:
TCCTACTTTACT
Flanking Amino Acid:
HSCVTIGGDHSLALGSVSGH
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
73.7
33.1
Major BPS
65.2
0.38
1
57.3
39.1
Major PPT
80.9
0.69
0.8
74.3
34.8
Minor 5ss
38.7
-1.3
2.9
47.9
47.8
Minor BPS
60.7
0.42
1.9
77.05
45.1

Associated Gene:

Gene:
ARG2
Ensembl Gene ID:
ENSAPLG00000015602
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016259
27002769 - 27021540
18772