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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27023091_27024691_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27023091 - 27024691
Intron Length:
1601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGAGGC
5'SS Class:
major
3'SS Sequence:
GCTTGTGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAG
U12 Branch Point Sequence:
CTTGTGTTACAG
Flanking Amino Acid:
AAYGVFVLSENSMVLSGAIF
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
64.4
40.6
Major BPS
60.5
0.26
1.7
69.7
44.2
Major PPT
75.4
0.57
1
67.8
42.5
Minor 5ss
29.7
-2.3
3.5
41.9
44.9
Minor BPS
40.2
-0.8
2.3
47.05
46.3

Associated Gene:

Gene:
PIGH
Ensembl Gene ID:
ENSAPLG00000001006
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001005
27020057 - 27029352
9296