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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27027102_27029250_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27027102 - 27029250
Intron Length:
2149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
ATGTGATTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
TGTTGTTTGATG
Flanking Amino Acid:
GVSEVVPLFQSSQPRLDCLM
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
69
0.43
1
59.5
45.7
Minor 5ss
32.4
-2
3
40.7
45.5
Minor BPS
54.2
-0
1.8
62.51
40.3

Associated Gene:

Gene:
PIGH
Ensembl Gene ID:
ENSAPLG00000001006
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001005
27020057 - 27029352
9296