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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27035907_27036222_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27035907 - 27036222
Intron Length:
316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TTACAGTTAATC
Flanking Amino Acid:
KLLFAMAIPKIVEATLLIAS
Intron Amino Acid Position:
1254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.6
29.6
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
81.1
0.7
0.7
74.7
30.6
Minor 5ss
36.1
-1.6
2.6
44
43
Minor BPS
49.3
-0
2.2
65.88
39.5

Associated Gene:

Gene:
PLEKHH1
Ensembl Gene ID:
ENSAPLG00000001036
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001179
27035730 - 27060673
24944