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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27036370_27036898_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27036370 - 27036898
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGGTGA
5'SS Class:
major
3'SS Sequence:
TCTGTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTCTTTTCAACT
Flanking Amino Acid:
GISILDYNTMHLKLSYSYSS
Intron Amino Acid Position:
1205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
61
40
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
85.6
0.8
0.8
80.7
31.4
Minor 5ss
42.3
-0.8
3.1
52.5
46.6
Minor BPS
61.6
0.44
1.6
74.97
42.5

Associated Gene:

Gene:
PLEKHH1
Ensembl Gene ID:
ENSAPLG00000001036
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001179
27035730 - 27060673
24944