About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27048632_27049218_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27048632 - 27049218
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTAGA
5'SS Class:
major
3'SS Sequence:
CCCTATTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TCTTCCCTATTT
Flanking Amino Acid:
LQTEALKLFKSCQLFINVPV
Intron Amino Acid Position:
801

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
71
40.8
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
81.1
0.7
0.8
74.8
33.2
Minor 5ss
34.1
-1.8
2.9
43.4
43.5
Minor BPS
59.6
0.38
2
80.43
41.9

Associated Gene:

Gene:
PLEKHH1
Ensembl Gene ID:
ENSAPLG00000001036
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001179
27035730 - 27060673
24944