About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27049332_27050050_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27049332 - 27050050
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTGCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GTTTCTGACAGT
Flanking Amino Acid:
GKLLDAEGDPNSPLWKHPML
Intron Amino Acid Position:
763

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
80.4
0.68
0.9
77.5
36.9
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
39.1
-0.7
2.7
63.47
47.2

Associated Gene:

Gene:
PLEKHH1
Ensembl Gene ID:
ENSAPLG00000001036
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001179
27035730 - 27060673
24944