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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27050160_27050290_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27050160 - 27050290
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTATGCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATCCTTATGC
Flanking Amino Acid:
YLLIRTKHEKNTWLYHLTVA
Intron Amino Acid Position:
727

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.2
33.9
Major BPS
100
1.24
0.5
100
0
Major PPT
67.9
0.4
0.9
61.6
39.1
Minor 5ss
38.7
-1.3
2.9
50.6
45.9
Minor BPS
57
0.2
1.9
66.86
44.7

Associated Gene:

Gene:
PLEKHH1
Ensembl Gene ID:
ENSAPLG00000001036
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001179
27035730 - 27060673
24944