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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27050471_27051501_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27050471 - 27051501
Intron Length:
1031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
ACTTACCTAACT
Flanking Amino Acid:
FYYYRNHEDKCPLGHLPLRE
Intron Amino Acid Position:
667

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79.8
35.1
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
80.9
0.7
0.7
73.6
31.5
Minor 5ss
36
-1.6
3
50.1
46.1
Minor BPS
61.7
0.45
1.9
80.45
40.9

Associated Gene:

Gene:
PLEKHH1
Ensembl Gene ID:
ENSAPLG00000001036
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001179
27035730 - 27060673
24944