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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27053592_27053954_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27053592 - 27053954
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TTCTTCCTACTG
Flanking Amino Acid:
NGQIMYYKSPSDVIRKPQGQ
Intron Amino Acid Position:
557

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
72.7
38.8
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
87.1
0.84
0.7
80.8
31.2
Minor 5ss
35
-1.7
2.9
45.5
42.6
Minor BPS
48.3
-0.2
2
58.92
43.6

Associated Gene:

Gene:
PLEKHH1
Ensembl Gene ID:
ENSAPLG00000001036
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001179
27035730 - 27060673
24944