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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27055894_27056409_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27055894 - 27056409
Intron Length:
516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGGAGC
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
CTTTCCTTACAA
Flanking Amino Acid:
AVPVYAMLKGKATQISNVPF
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
67.8
43.5
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
87.7
0.85
0.8
80.2
37.3
Minor 5ss
32.2
-2
3.1
34.8
41.4
Minor BPS
66.3
0.51
1.8
76.43
40.8

Associated Gene:

Gene:
PLEKHH1
Ensembl Gene ID:
ENSAPLG00000001036
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001179
27035730 - 27060673
24944