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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27057233_27059575_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27057233 - 27059575
Intron Length:
2343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTATTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTGACTGACCA
Flanking Amino Acid:
TPPLHRFPSWESRIYDMAKS
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.7
33.7
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
78.8
0.65
1
69.8
45.2
Minor 5ss
34.7
-1.7
3
41.3
44.8
Minor BPS
49.3
-0
2
69.21
42.9

Associated Gene:

Gene:
PLEKHH1
Ensembl Gene ID:
ENSAPLG00000001036
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001179
27035730 - 27060673
24944