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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_271076_271508_F

Intron Information:

Intron Rank:
138727
Intron Class:
major
Intron Phase:
Intron Coordinates:
271076 - 271508
Intron Length:
433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTCTGTCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78.9
0.65
0.9
78.3
34.8
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
50.5
-0
2.3
73.34
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024714
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046815
268474 - 272567
4094
ENSAPLT00000028220
268474 - 272564
4091