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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27112529_27117965_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
27112529 - 27117965
Intron Length:
5437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCACA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTGCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TGAAATAAAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.6
40.2
Major BPS
62
0.3
1
62.3
30.4
Major PPT
73.5
0.53
0.9
65.8
41
Minor 5ss
38.3
-1.3
3.1
49.3
46.7
Minor BPS
42.7
-0.4
2
60.57
42.4

Associated Gene:

Gene:
RAD51B
Ensembl Gene ID:
ENSAPLG00000002285
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044488
27111877 - 27469794
357918