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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27118142_27156749_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27118142 - 27156749
Intron Length:
38608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTCTCAAAAACT
Flanking Amino Acid:
RESSRIPPQKRLGSMAAKKL
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
30
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
80.1
0.68
0.8
74.7
30.5
Minor 5ss
33.1
-1.9
3.4
48.3
47.4
Minor BPS
49.9
0.07
2.2
78.09
43.9

Associated Gene:

Gene:
RAD51B
Ensembl Gene ID:
ENSAPLG00000002285
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047114
27107099 - 27469794
362696
ENSAPLT00000044488
27111877 - 27469794
357918
ENSAPLT00000040960
27107099 - 27531051
423953