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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27145407_27153494_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27145407 - 27153494
Intron Length:
8088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTTATT
Flanking Amino Acid:
MKEVFCHYHL
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.5
27.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.6
0.87
0.7
81
36
Minor 5ss
42.9
-0.8
2.8
57.1
40.8
Minor BPS
55.8
0.26
1.9
77.76
38.8

Associated Gene:

Gene:
RAD51B
Ensembl Gene ID:
ENSAPLG00000002285
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021414
27145405 - 27531051
385647