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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27155847_27156749_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
27155847 - 27156749
Intron Length:
903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGCGG
5'SS Class:
major
3'SS Sequence:
TTTTGCCCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTCTCAAAAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
51.3
46.9
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
80.1
0.68
0.8
74.7
30.5
Minor 5ss
24.3
-3
3
21.2
37.4
Minor BPS
49.9
0.07
2.2
78.09
43.9

Associated Gene:

Gene:
RAD51B
Ensembl Gene ID:
ENSAPLG00000002285
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032799
27155203 - 27531051
375849