Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27159487 - 27164821

Intron Length:

5335

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTGTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTAAT

U12 Branch Point Sequence:

TGTTACTAATCT

Flanking Amino Acid:

GGVPCGSLTEITSPPGCGKT

Intron Amino Acid Position:

106

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.9

0.92

0.9

89.8

23.7

Major BPS

86.7

0.91

0.7

84.2

21.8

Major PPT

0.94

0.7

87.5

Minor 5ss

46.2

-0.4

2.8

67.4

43.6

Minor BPS

52.5

0.16

2.1

77.82

44.1

Associated Gene:

Gene:

RAD51B

Ensembl Gene ID:

ENSAPLG00000002285

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032799

27155203 - 27531051

375849

ENSAPLT00000043278

27153427 - 27469794

316368

ENSAPLT00000030286

27156750 - 27573311

416562

ENSAPLT00000040960

27107099 - 27531051

423953

ENSAPLT00000021414

27145405 - 27531051

385647

ENSAPLT00000040580

27156750 - 27249182

92433

ENSAPLT00000047114

27107099 - 27469794

362696

ENSAPLT00000002294

27156750 - 27192214

35465

ENSAPLT00000037718

27156750 - 27425848

269099

ENSAPLT00000044488

27111877 - 27469794

357918

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27159487_27164821_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: