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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27189657_27192156_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27189657 - 27192156
Intron Length:
2500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
ATTTTAATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCATTTTAATT
Flanking Amino Acid:
LPTWLQLQQSEQPSLCCCLW
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
80.7
33.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.8
0.69
0.9
71.7
42.4
Minor 5ss
37.5
-1.4
3
47.9
41.8
Minor BPS
69.3
0.68
1.2
79.53
37.3

Associated Gene:

Gene:
RAD51B
Ensembl Gene ID:
ENSAPLG00000002285
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002294
27156750 - 27192214
35465