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Intron Name: Anas_platyrhynchos_platyrhynchos_5_2726188_2735913_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2726188 - 2735913

Intron Length:

9726

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAATAGA

5'SS Class:

strong_major

3'SS Sequence:

GCTTCTTTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

CTTCTAATGATT

Flanking Amino Acid:

NLILCRRDYLRLFGTTGNCA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

80.4

34.2

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

75.7

0.58

72.4

37.7

Minor 5ss

34.4

-1.8

2.8

42.8

Minor BPS

45.8

-0.2

1.8

66.1

38.6

Associated Gene:

Gene:

LMO1

Ensembl Gene ID:

ENSAPLG00000029620

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017925

2687866 - 2741505

53640

ENSAPLT00000042291

2685522 - 2737847

52326

ENSAPLT00000038503

2688552 - 2741505

52954

ENSAPLT00000028563

2685522 - 2741505

55984

ENSAPLT00000023234

2675736 - 2741505

65770