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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27324367_27383036_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27324367 - 27383036
Intron Length:
58670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCACAATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
GTTTCTTTCACA
Flanking Amino Acid:
SPADDLFLSEVSGASGSGKK
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
26.4
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
69.5
0.44
1
68.2
36.7
Minor 5ss
32.1
-2
3.5
46.6
48.7
Minor BPS
70
0.62
1.7
79.83
36.4

Associated Gene:

Gene:
RAD51B
Ensembl Gene ID:
ENSAPLG00000002285
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021414
27145405 - 27531051
385647
ENSAPLT00000040960
27107099 - 27531051
423953
ENSAPLT00000037718
27156750 - 27425848
269099
ENSAPLT00000047114
27107099 - 27469794
362696
ENSAPLT00000032799
27155203 - 27531051
375849
ENSAPLT00000044488
27111877 - 27469794
357918
ENSAPLT00000030286
27156750 - 27573311
416562
ENSAPLT00000043278
27153427 - 27469794
316368