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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2736040_2740178_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2736040 - 2740178
Intron Length:
4139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CTGTTCATACTG
Flanking Amino Acid:
DCFACQLCNQRFCVGDKFFL
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
72.7
38.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
85
0.79
0.9
76.9
42.1
Minor 5ss
33
-1.9
3.1
41.9
44.5
Minor BPS
45.8
-0.4
1.9
50.95
44.2

Associated Gene:

Gene:
LMO1
Ensembl Gene ID:
ENSAPLG00000029620
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017249
2685035 - 2741505
56471
ENSAPLT00000035747
2685035 - 2741505
56471
ENSAPLT00000028563
2685522 - 2741505
55984
ENSAPLT00000023234
2675736 - 2741505
65770
ENSAPLT00000017925
2687866 - 2741505
53640
ENSAPLT00000038503
2688552 - 2741505
52954