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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27583780_27584315_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27583780 - 27584315
Intron Length:
536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACGCG
5'SS Class:
major
3'SS Sequence:
TTTCTGCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTGAC
U12 Branch Point Sequence:
GTGGCAGTGACC
Flanking Amino Acid:
IFDLSEVLCKSNKMLNYSPS
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
63
41.8
Major BPS
51.2
0.03
1.2
44.4
38.7
Major PPT
79
0.65
0.8
73.5
31.5
Minor 5ss
36
-1.6
3.4
47.6
48
Minor BPS
43.3
-0.5
2.3
55.33
43.2

Associated Gene:

Gene:
ZFP36L1
Ensembl Gene ID:
ENSAPLG00000018780
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044059
27582778 - 27584372
1595