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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27613364_27614298_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27613364 - 27614298
Intron Length:
935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CAGCTTTTAATT
Flanking Amino Acid:
IKLIEDHRRHRSRSRSRSYS
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
70.6
41.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.7
0.67
0.8
77.9
36.6
Minor 5ss
39.7
-1.2
2.8
49
47.2
Minor BPS
58.5
0.35
1.3
65.44
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002469
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002493
27613065 - 27625684
12620