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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27615189_27618935_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27615189 - 27618935
Intron Length:
3747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTACTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
TTAACTTTTACT
Flanking Amino Acid:
ENLSSRISWQDLKDVMRKAG
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
80.5
0.69
0.8
74.6
34.2
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
65.3
0.56
1.7
81.7
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002469
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002493
27613065 - 27625684
12620