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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27619009_27621280_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27619009 - 27621280
Intron Length:
2272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TGAACTCTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
CCCCTCTGAACT
Flanking Amino Acid:
FSYYQSTSGSSRYGPPVRTE
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
76.2
39.9
Major BPS
69.8
0.49
1
61
37.5
Major PPT
68.3
0.41
0.9
58.9
42.6
Minor 5ss
33
-1.9
3.5
49.2
47.1
Minor BPS
54.8
0.23
1.5
65.4
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002469
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002493
27613065 - 27625684
12620