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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27634752_27636584_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27634752 - 27636584
Intron Length:
1833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
GTCCTCATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTTGCCTTATCT
Flanking Amino Acid:
ASFKILAGDKNYITVDELRR
Intron Amino Acid Position:
841

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
76.4
0.59
0.9
69.8
35.2
Minor 5ss
29.9
-2.3
3.4
41
45.6
Minor BPS
68
0.64
1.8
83.49
43.8

Associated Gene:

Gene:
ACTN1
Ensembl Gene ID:
ENSAPLG00000002615
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029047
27634593 - 27718792
84200
ENSAPLT00000021455
27634593 - 27718792
84200
ENSAPLT00000002745
27633593 - 27718792
85200
ENSAPLT00000036227
27634593 - 27718792
84200