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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27638284_27640903_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27638284 - 27640903
Intron Length:
2620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TCACTCTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CTTTGCATCACT
Flanking Amino Acid:
FRASFNHFDRKKTGMMDCED
Intron Amino Acid Position:
761

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
68.8
43.8
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
74.8
0.56
0.8
69.9
30.7
Minor 5ss
33.1
-1.9
2.8
33
41.8
Minor BPS
48.5
-0
2.4
76.44
46

Associated Gene:

Gene:
ACTN1
Ensembl Gene ID:
ENSAPLG00000002615
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029047
27634593 - 27718792
84200