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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27641051_27642015_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27641051 - 27642015
Intron Length:
965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TAATTTATAAAT
Flanking Amino Acid:
DNKHTNYTMEHIRVGWEQLL
Intron Amino Acid Position:
712

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
78.6
0.71
1
78.6
31
Major PPT
86.8
0.83
0.7
79.5
32.5
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
53.9
0.2
1.7
72.09
38.2

Associated Gene:

Gene:
ACTN1
Ensembl Gene ID:
ENSAPLG00000002615
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002745
27633593 - 27718792
85200
ENSAPLT00000036227
27634593 - 27718792
84200
ENSAPLT00000029047
27634593 - 27718792
84200
ENSAPLT00000021455
27634593 - 27718792
84200