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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27642196_27643050_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27642196 - 27643050
Intron Length:
855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTGCTT
5'SS Class:
major
3'SS Sequence:
TAATTTAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CCTTTGTTAATT
Flanking Amino Acid:
IGPWIQTKMEEIGRISIEMH
Intron Amino Acid Position:
652

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
68
42.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
72.9
0.52
1
67.6
42.2
Minor 5ss
42.8
-0.8
3.4
65
46.3
Minor BPS
57.7
0.32
2.1
74.4
43.5

Associated Gene:

Gene:
ACTN1
Ensembl Gene ID:
ENSAPLG00000002615
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029047
27634593 - 27718792
84200
ENSAPLT00000021455
27634593 - 27718792
84200
ENSAPLT00000002745
27633593 - 27718792
85200
ENSAPLT00000036227
27634593 - 27718792
84200