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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27647060_27649500_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27647060 - 27649500
Intron Length:
2441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGGCAC
5'SS Class:
major
3'SS Sequence:
CCACCCCTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTTCCCCACCC
Flanking Amino Acid:
EQIAAIAQELNELDYYDSPS
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.43
1.1
57.9
41.4
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
67.8
0.4
0.8
60.3
29.3
Minor 5ss
31.7
-2.1
3.5
41.3
39.7
Minor BPS
53
0.07
2.2
75.8
40.5

Associated Gene:

Gene:
ACTN1
Ensembl Gene ID:
ENSAPLG00000002615
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021455
27634593 - 27718792
84200
ENSAPLT00000002745
27633593 - 27718792
85200
ENSAPLT00000036227
27634593 - 27718792
84200
ENSAPLT00000029047
27634593 - 27718792
84200