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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27651102_27652237_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27651102 - 27652237
Intron Length:
1136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAGGTGTC
5'SS Class:
major
3'SS Sequence:
TTGATCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTTTCTTGATCT
Flanking Amino Acid:
MEDYEKLASDLLEWIRRTIP
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
74.5
35.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
81.9
0.72
0.9
73.5
41.7
Minor 5ss
38.3
-1.3
3.6
56.1
42.1
Minor BPS
62.6
0.47
1.7
81.71
39.7

Associated Gene:

Gene:
ACTN1
Ensembl Gene ID:
ENSAPLG00000002615
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036227
27634593 - 27718792
84200
ENSAPLT00000029047
27634593 - 27718792
84200
ENSAPLT00000021455
27634593 - 27718792
84200
ENSAPLT00000002745
27633593 - 27718792
85200