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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27652331_27658915_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27652331 - 27658915
Intron Length:
6585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCACAG
5'SS Class:
major
3'SS Sequence:
TTCTCTTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTCTTCTCT
Flanking Amino Acid:
FYHAFSGAQKAETAANRICK
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.2
55.2
43.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
81.9
0.72
0.9
80.1
31.9
Minor 5ss
42.9
-0.8
2.9
56
48.1
Minor BPS
47.7
-0
3.6
87.15
38.9

Associated Gene:

Gene:
ACTN1
Ensembl Gene ID:
ENSAPLG00000002615
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021455
27634593 - 27718792
84200
ENSAPLT00000002745
27633593 - 27718792
85200
ENSAPLT00000029047
27634593 - 27718792
84200