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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27657635_27660627_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27657635 - 27660627
Intron Length:
2993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTGG
5'SS Class:
major
3'SS Sequence:
CTTCTCTGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
CTTACTTTATCC
Flanking Amino Acid:
LDIPKMLDAEDIIGTLRPDE
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
63.7
43.1
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
76.2
0.59
0.9
71.6
32.9
Minor 5ss
35.5
-1.6
3.3
46.8
48.5
Minor BPS
61.5
0.34
1.7
70.65
41

Associated Gene:

Gene:
ACTN1
Ensembl Gene ID:
ENSAPLG00000002615
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036227
27634593 - 27718792
84200