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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27659002_27660627_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27659002 - 27660627
Intron Length:
1626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTGG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAC
U12 Branch Point Sequence:
TTTTTTTTGACA
Flanking Amino Acid:
LDIPKMLDAEDIVGTARPDE
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
63.7
43.1
Major BPS
77.1
0.67
1
77.9
32.2
Major PPT
89
0.88
0.8
87.5
30
Minor 5ss
35.5
-1.6
3.3
46.8
48.5
Minor BPS
79.3
0.92
1
85.48
26.3

Associated Gene:

Gene:
ACTN1
Ensembl Gene ID:
ENSAPLG00000002615
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029047
27634593 - 27718792
84200
ENSAPLT00000021455
27634593 - 27718792
84200
ENSAPLT00000002745
27633593 - 27718792
85200