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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27666850_27668006_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27666850 - 27668006
Intron Length:
1157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGAACAC
U12 Branch Point Sequence:
CCTGGCTGAACA
Flanking Amino Acid:
KNVNIQNFHISWKDGLGFCA
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
77.5
32.9
Major BPS
48.4
-0.1
1.2
55.1
40.5
Major PPT
82.3
0.73
0.8
76
32.6
Minor 5ss
29.1
-2.4
2.8
34.7
41.7
Minor BPS
48.3
-0.1
2
59.45
46.4

Associated Gene:

Gene:
ACTN1
Ensembl Gene ID:
ENSAPLG00000002615
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029047
27634593 - 27718792
84200
ENSAPLT00000021455
27634593 - 27718792
84200
ENSAPLT00000002745
27633593 - 27718792
85200
ENSAPLT00000036227
27634593 - 27718792
84200