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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2769590_2773067_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2769590 - 2773067
Intron Length:
3478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTTTCA
Flanking Amino Acid:
RTEPGAAPPDGKPGRFPPRM
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
67.3
36.7
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
100
1.12
0.4
100
0
Minor 5ss
32.2
-2
3.4
44
43.3
Minor BPS
44.4
-0.4
3.5
74.12
37.8

Associated Gene:

Gene:
RIC3
Ensembl Gene ID:
ENSAPLG00000014075
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014667
2769331 - 2781837
12507