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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2770604_2773067_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2770604 - 2773067
Intron Length:
2464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTCAGAAG
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTTTCA
Flanking Amino Acid:
CPAHPDVTLPGKPGRFPPRM
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.6
0.2
1.2
55.1
43.4
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
100
1.12
0.4
100
0
Minor 5ss
26.3
-2.7
3.1
31
42.7
Minor BPS
44.4
-0.4
3.5
74.12
37.8

Associated Gene:

Gene:
RIC3
Ensembl Gene ID:
ENSAPLG00000014075
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018955
2769753 - 2781837
12085