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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27747901_27754294_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27747901 - 27754294
Intron Length:
6394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
CSSGVEKIIKIWSPYKQPDC
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.8
0.87
0.8
83.7
31.3
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
DCAF5
Ensembl Gene ID:
ENSAPLG00000003114
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022162
27746089 - 27814536
68448
ENSAPLT00000021975
27746089 - 27807588
61500
ENSAPLT00000003171
27746089 - 27808316
62228